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Show me yours and I’ll show you mine

August 9, 2012 9 comments

I remember when I started with R, there was little processing power directed toward an IDE. I had enough problems with the syntax, loops and the like and R gui seemed adequate. When I started working on a heavy project, I had to knock it up a notch (bam!). After weeks of trial and error with various IDEs I settled for Eclipse. Year was 2010.
After two years, I feel very comfortable in my IDE of choice but I’ve always felt there’s some things I might be missing. That’s why I’m starting “show me yours and I’ll show you mine” project where I wish to collect workflow setup for working for programming and/or data analysis. The idea is to present your setup and comment on why you think it’s (in)efficient for you. I’ll start!

As mentioned, I use Eclipse with a plugin StatET. Eclipse (and StatET) depend on Java, so you’ll probably have to install either JDK or SDK. This may be a limiting factor for some. Eclipse offers a number of handy keyboard shortcuts (for instance CTRL+r+3 sends line/chunk to R, CTRL+r+s sources the entire file…), manages windows, provides different views and more.

My setup has two code editing windows in the upper left corner, project explorer and task list (kudos to Andrie) on the right. Bottom half holds the R console and R help/tasks. I can easily navigate through files while debugging programs and handy keyboard shortcuts really cut down production time. I like having all windows handy. This is aided by Mylyn Task List plugin that helps you store and switch between individual sets of scripts. More about Mylyn can be found here. I also have a button to run knitr script which produces a pdf report (see previous post). I connect to a SVN server where I store my work. Switching to a SVN look is achieved by clicking the “SVN” icon in the top right corner.

I would encourage anyone interested in sharing their ideas about how to set up their workflow on this blog to send me a screenshot and a short description to my gmail account (romunov) or post about it on their own internet outlet (blog, personal website…) and send a traceback back here.

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